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  5. Gb_27340

Gb_27340


Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 311.0)


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00123610 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G24130 No alias Transducin/WD40 repeat-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G49450 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G18950 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G50120 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g023030 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g054356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g16590 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g47144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24032 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g32167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g36145 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g04228 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g26677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05740.t1 Aspi01Gene05740 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05743.t1 Aspi01Gene05743 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05748.t1 Aspi01Gene05748 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11108.t1 Aspi01Gene11108 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene23387.t1 Aspi01Gene23387 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23389.t2 Aspi01Gene23389 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30194.t1 Aspi01Gene30194 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30197.t1 Aspi01Gene30197 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38685.t1 Aspi01Gene38685 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene44873.t1 Aspi01Gene44873 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45302.t1 Aspi01Gene45302 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene60159.t1 Aspi01Gene60159 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene68892.t1 Aspi01Gene68892 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene68894.t1 Aspi01Gene68894 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010472 No alias not classified & original description: CDS=1-1746 0.02 OrthoFinder output from all 47 species
Cba_g09340 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g52387 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.05G066900.1 Ceric.05G066900 not classified & original description: pacid=50578771... 0.03 OrthoFinder output from all 47 species
Ceric.12G075900.1 Ceric.12G075900 not classified & original description: pacid=50601390... 0.02 OrthoFinder output from all 47 species
Ceric.12G085200.1 Ceric.12G085200 not classified & original description: pacid=50602067... 0.02 OrthoFinder output from all 47 species
Ceric.28G012400.1 Ceric.28G012400 not classified & original description: pacid=50570345... 0.03 OrthoFinder output from all 47 species
Ceric.28G012600.1 Ceric.28G012600 not classified & original description: pacid=50570711... 0.01 OrthoFinder output from all 47 species
Ceric.28G012700.1 Ceric.28G012700 not classified & original description: pacid=50571070... 0.01 OrthoFinder output from all 47 species
Dac_g02144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g40515 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g19296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25993 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007825001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01031882001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_19215 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Len_g24189 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10429180g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431396g0020 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g25877 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34011 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g42608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30301 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g08900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo66275 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Solyc01g109120.3.1 Solyc01g109120 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g111780.1.1 Solyc03g111780 Protein JINGUBANG OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Solyc12g088980.2.1 Solyc12g088980 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e007790_P001 Zm00001e007790 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e015781_P001 Zm00001e015781 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e041085_P001 Zm00001e041085 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0010112 regulation of systemic acquired resistance IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 273 308
IPR001680 WD40_repeat 120 154
IPR001680 WD40_repeat 407 446
IPR001680 WD40_repeat 368 398
IPR001680 WD40_repeat 319 354
IPR001680 WD40_repeat 249 267
No external refs found!