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Gb_26865


Description : E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana (sp|q9spl2|cip8_arath : 133.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26865

Target Alias Description ECC score Gene Family Method Actions
AT5G01980 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g102739 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g11642 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
GSVIVT01037379001 RHC1A Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Len_g20588 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g28304 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Msp_g24752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g050040.4.1 ATCRT1, Solyc01g050040 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Solyc02g065650.1.1 Solyc02g065650 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Zm00001e038199_P001 RHC1A, Zm00001e038199 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 383 424
No external refs found!