1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_26765

Gb_26765


Description : Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana (sp|q9ln69|ppr50_arath : 633.0)


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26765

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00111980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09820... 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.03 OrthoFinder output from all 47 species
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00105070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G66345 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Gb_08861 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.05 OrthoFinder output from all 47 species
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.04 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.04 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 OrthoFinder output from all 47 species
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc05g051340.3.1 Solyc05g051340 group-II intron mitochondrial splicing factor (MISF26) 0.02 OrthoFinder output from all 47 species
Solyc07g047620.3.1 Solyc07g047620 Pentatricopeptide repeat-containing protein At4g26680,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008237 metallopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 607 640
IPR002885 Pentatricopeptide_repeat 817 846
IPR002885 Pentatricopeptide_repeat 503 532
IPR002885 Pentatricopeptide_repeat 914 964
IPR002885 Pentatricopeptide_repeat 196 224
IPR002885 Pentatricopeptide_repeat 751 799
IPR002885 Pentatricopeptide_repeat 296 345
IPR002885 Pentatricopeptide_repeat 226 275
IPR002885 Pentatricopeptide_repeat 857 905
IPR002885 Pentatricopeptide_repeat 541 589
IPR002885 Pentatricopeptide_repeat 366 415
IPR002885 Pentatricopeptide_repeat 649 695
IPR002885 Pentatricopeptide_repeat 436 485
No external refs found!