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Gb_26477


Description : Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana (sp|q9szl5|pp356_arath : 191.0)


Gene families : OG0012203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26477
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00166290 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g38150... 0.08 OrthoFinder output from all 47 species
AMTR_s00022p00050920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g38150... 0.11 OrthoFinder output from all 47 species
GSVIVT01023844001 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.05 OrthoFinder output from all 47 species
Gb_29332 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.06 OrthoFinder output from all 47 species
Solyc12g096140.3.1 Solyc12g096140 Pentatricopeptide repeat-containing protein At4g38150... 0.04 OrthoFinder output from all 47 species
Zm00001e026388_P001 Zm00001e026388 Pentatricopeptide repeat-containing protein At4g38150... 0.04 OrthoFinder output from all 47 species
Zm00001e041548_P001 Zm00001e041548 Pentatricopeptide repeat-containing protein At4g38150... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 198
IPR002885 Pentatricopeptide_repeat 271 309
IPR002885 Pentatricopeptide_repeat 201 250
No external refs found!