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  5. Gb_26285

Gb_26285 (RPOC2)


Aliases : RPOC2

Description : DNA-directed RNA polymerase subunit beta OS=Cycas taitungensis (sp|a6h5f7|rpoc2_cycta : 278.0)


Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26285

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00130230 RPOC2,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.02 OrthoFinder output from all 47 species
AMTR_s00390p00012910 RPOC2,... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.07 OrthoFinder output from all 47 species
Aev_g15088 RPOC2 core component *(RpoC2) of plastid-encoded RNA... 0.12 OrthoFinder output from all 47 species
Ceric.02G012700.1 RPOC2, Ceric.02G012700 core component *(RpoC2) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
Ceric.06G046000.1 RPOC2, Ceric.06G046000 not classified & original description: pacid=50620845... 0.12 OrthoFinder output from all 47 species
Ceric.29G004900.1 RPOC2, Ceric.29G004900 core component *(RpoC2) of plastid-encoded RNA... 0.1 OrthoFinder output from all 47 species
Ceric.32G060700.1 RPOC2, Ceric.32G060700 not classified & original description: pacid=50597350... 0.06 OrthoFinder output from all 47 species
Ceric.38G010100.1 RPOC2, Ceric.38G010100 core component *(RpoC2) of plastid-encoded RNA... 0.15 OrthoFinder output from all 47 species
Ceric.38G010200.1 RPOC2, Ceric.38G010200 not classified & original description: pacid=50579905... 0.12 OrthoFinder output from all 47 species
GSVIVT01019173001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.1 OrthoFinder output from all 47 species
LOC_Os04g16830.1 RPOC2, LOC_Os04g16830 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Mp1g00060.1 RPOC2 RpoC2 core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027467 RPOC2 not classified & original description: CDS=1-840 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027468 RPOC2 not classified & original description: CDS=1-702 0.04 OrthoFinder output from all 47 species
Solyc00g500052.1.1 RPOC2, Solyc00g500052 RpoC1 core component plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
Solyc00g500135.1.1 RPOC2, Solyc00g500135 RpoC1 core component plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
Solyc00g500205.1.1 RPOC2, Solyc00g500205 RpoC1 core component plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
Solyc00g500290.1.1 RPOC2, Solyc00g500290 RpoC2 core component plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Solyc01g056840.1.1 RPOC2, Solyc01g056840 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc10g011720.1.1 RPOC2, Solyc10g011720 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 OrthoFinder output from all 47 species
Solyc11g007260.1.1 RPOC2, Solyc11g007260 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.03 OrthoFinder output from all 47 species
Solyc12g062650.1.1 RPOC2, Solyc12g062650 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!