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  5. Gb_26055

Gb_26055 (ICU2)


Aliases : ICU2

Description : DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica (sp|o48653|dpola_orysj : 228.0)


Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26055
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221560 ICU2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.19 OrthoFinder output from all 47 species
AT5G67100 ICU2 DNA-directed DNA polymerases 0.17 OrthoFinder output from all 47 species
Als_g33916 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Aspi01Gene70874.t1 ICU2, Aspi01Gene70874 catalytic component *(POLA1) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Azfi_s0226.g059002 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Ceric.09G047200.1 ICU2, Ceric.09G047200 catalytic component *(POLA1) of DNA polymerase alpha... 0.23 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000237.42 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
Cre04.g214350 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.11 OrthoFinder output from all 47 species
Dcu_g12848 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.16 OrthoFinder output from all 47 species
GSVIVT01022113001 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.23 OrthoFinder output from all 47 species
LOC_Os01g64820.1 ICU2, LOC_Os01g64820 catalytic component POLA1 of DNA polymerase alpha complex 0.14 OrthoFinder output from all 47 species
Len_g55945 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.16 OrthoFinder output from all 47 species
MA_10427959g0010 ICU2 DNA polymerase alpha catalytic subunit OS=Arabidopsis... 0.23 OrthoFinder output from all 47 species
MA_242082g0010 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.24 OrthoFinder output from all 47 species
MA_3471g0020 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.23 OrthoFinder output from all 47 species
Mp7g03960.1 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.18 OrthoFinder output from all 47 species
Msp_g14735 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Nbi_g01498 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Sam_g08423 No alias catalytic component *(POLA1) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Smo232193 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
Smo422725 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
Solyc02g093300.3.1 ICU2, Solyc02g093300 catalytic component POLA1 of DNA polymerase alpha complex 0.15 OrthoFinder output from all 47 species
Spa_g09409 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.12 OrthoFinder output from all 47 species
Tin_g01298 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.17 OrthoFinder output from all 47 species
Zm00001e019156_P001 ICU2, Zm00001e019156 catalytic component POLA1 of DNA polymerase alpha complex 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024647 DNA_pol_a_cat_su_N 26 93
No external refs found!