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  5. Gb_25869

Gb_25869 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana (sp|q9sva5|pp357_arath : 530.0)


Gene families : OG0010336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25869
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Gb_25611 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 223 255
IPR002885 Pentatricopeptide_repeat 447 495
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 548 596
IPR002885 Pentatricopeptide_repeat 122 169
IPR002885 Pentatricopeptide_repeat 650 698
IPR002885 Pentatricopeptide_repeat 419 445
IPR002885 Pentatricopeptide_repeat 391 416
IPR002885 Pentatricopeptide_repeat 256 285
IPR002885 Pentatricopeptide_repeat 724 748
No external refs found!