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  5. Gb_25842

Gb_25842


Description : C2H2 zinc finger transcription factor


Gene families : OG0001550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25842
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00197580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
AMTR_s00199p00026650 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
AT1G11490 No alias zinc finger (C2H2 type) family protein 0.04 OrthoFinder output from all 47 species
AT1G75710 No alias C2H2-like zinc finger protein 0.03 OrthoFinder output from all 47 species
Aev_g16997 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58391.t1 Aspi01Gene58391 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g15387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008925001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
GSVIVT01014576001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Gb_08005 No alias C2H2 zinc finger transcription factor. sugar efflux... 0.01 OrthoFinder output from all 47 species
LOC_Os01g57650.1 LOC_Os01g57650 C2H2 zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
LOC_Os03g15790.1 LOC_Os03g15790 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os04g59380.1 LOC_Os04g59380 C2H2 zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
LOC_Os06g46910.1 LOC_Os06g46910 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Len_g01208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g21490.1 No alias C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g04292 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023140 No alias not classified & original description: CDS=905-2272 0.02 OrthoFinder output from all 47 species
Smo236040 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 OrthoFinder output from all 47 species
Solyc02g079920.3.1 Solyc02g079920 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc07g063970.3.1 Solyc07g063970 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Tin_g17139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019606_P002 Zm00001e019606 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e028937_P001 Zm00001e028937 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA

No InterPro domains available for this sequence

No external refs found!