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  5. Gb_25386

Gb_25386


Description : Spliceosome-associated protein 130 A OS=Arabidopsis thaliana (sp|p0dkl4|s130a_arath : 127.0)


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25386

Target Alias Description ECC score Gene Family Method Actions
AT3G11960 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.05 OrthoFinder output from all 47 species
Adi_g008160 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008816 No alias not classified & original description: CDS=50-4432 0.05 OrthoFinder output from all 47 species
Cba_g12316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g11463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432916g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_20031g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g14215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc10g080630.2.1 Solyc10g080630 Spliceosome-associated protein 130 A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1109 1356
No external refs found!