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  5. Gb_24088

Gb_24088 (PUB9, ATPUB9)


Aliases : PUB9, ATPUB9

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24088

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00052670 PUB13, ATPUB13,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT3G01400 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g025519 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03944 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37780.t1 PUB13, ATPUB13,... E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Cre03.g178550 No alias Dynein assembly factor with WDR repeat domains 1... 0.04 OrthoFinder output from all 47 species
Dac_g01449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02285 ATPUB17, PUB17 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Len_g41552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10832 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00381 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e018578_P001 Zm00001e018578 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000225 Armadillo 301 339
IPR000225 Armadillo 227 257
IPR000225 Armadillo 260 299
IPR003613 Ubox_domain 92 162
No external refs found!