AMTR_s00003p00197480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.181

Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.PGX1 polygalacturonase


Gene families : OG_01_0000096 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000096_tree ,
OG_02_0000636 (LandPlants) Phylogenetic Tree(s): OG_02_0000636_tree ,
OG_03_0001748 (SeedPlants) Phylogenetic Tree(s): OG_03_0001748_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00197480
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT1G10640 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_13356 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Smo111266 No alias Polygalacturonase OS=Chamaecyparis obtusa 0.04 Archaeplastida
Solyc07g015870.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc12g019130.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Zm00001e017465_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_07774 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 102 417
No external refs found!