Gb_23200 (ATRABA4C, RABA4C, SMG1)

Aliases : ATRABA4C, RABA4C, SMG1

Description : A-class RAB GTPase

Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_23200

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00227570	RABA4D,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Adi_g005423	ATRABA4C, RABA4C, SMG1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0409.g068486	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase & original description: CDS=114-785	0.03	OrthoFinder output from all 47 species
Ceric.22G072300.1	RABA4D,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
GSVIVT01027396001	RABA3, ATRAB-A3, ATRABA3	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
Lfl_g28692	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04349	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g38230	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000673_P001	AtRABA4a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	177

External Links

No external refs found!