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  5. Gb_23088

Gb_23088 (OTP84)


Aliases : OTP84

Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana (sp|q7y211|pp285_arath : 763.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23088
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
GSVIVT01016874001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_03221 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_06560 OTP84 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_16898 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Gb_17295 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Gb_18359 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_27469 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_30097 CRR22 RNA editing factor (CRR21) 0.05 OrthoFinder output from all 47 species
Gb_36178 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
LOC_Os03g11700.1 MEF19, LOC_Os03g11700 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
LOC_Os04g57940.1 CRR22, LOC_Os04g57940 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_101084g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_10431227g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_118886g0010 CRR22 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_122546g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_124907g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_140208g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_140591g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_27147g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
MA_8319g0010 CRR2 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_8491g0010 CRR2 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_858608g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_9526611g0020 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Solyc02g070710.3.1 Solyc02g070710 Pentatricopeptide repeat-containing protein At3g20730... 0.03 OrthoFinder output from all 47 species
Zm00001e001918_P001 EMB2758, Zm00001e001918 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Zm00001e010182_P001 Zm00001e010182 Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species
Zm00001e010837_P001 LPA66, Zm00001e010837 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species
Zm00001e015358_P001 Zm00001e015358 Pentatricopeptide repeat-containing protein At5g39350... 0.03 OrthoFinder output from all 47 species
Zm00001e018565_P001 Zm00001e018565 Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
Zm00001e035654_P001 EMB2758, Zm00001e035654 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Zm00001e037600_P001 Zm00001e037600 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 454 479
IPR002885 Pentatricopeptide_repeat 85 108
IPR002885 Pentatricopeptide_repeat 555 578
IPR002885 Pentatricopeptide_repeat 757 780
IPR032867 DYW_dom 855 979
IPR002885 Pentatricopeptide_repeat 480 526
IPR002885 Pentatricopeptide_repeat 581 628
IPR002885 Pentatricopeptide_repeat 177 224
IPR002885 Pentatricopeptide_repeat 278 324
IPR002885 Pentatricopeptide_repeat 682 729
IPR002885 Pentatricopeptide_repeat 378 426
No external refs found!