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  5. Gb_22434

Gb_22434 (ATMBD9, MBD9)


Aliases : ATMBD9, MBD9

Description : Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana (sp|q9sgh2|mbd9_arath : 789.0)


Gene families : OG0006711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006711_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22434

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267510 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.06 OrthoFinder output from all 47 species
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.06 OrthoFinder output from all 47 species
Adi_g011991 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Aev_g28617 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Ala_g17040 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Als_g03908 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Aop_g10631 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.09 OrthoFinder output from all 47 species
Aspi01Gene65658.t1 ATMBD9, MBD9,... component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Cba_g07789 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Ceric.19G068300.1 ATMBD9, MBD9,... component *(MBD9) of SWR1 chromatin remodeling complex &... 0.07 OrthoFinder output from all 47 species
Dcu_g37526 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Ehy_g19882 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020232001 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.03 OrthoFinder output from all 47 species
Len_g47194 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
MA_10435977g0020 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.09 OrthoFinder output from all 47 species
MA_41907g0010 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.03 OrthoFinder output from all 47 species
Mp8g01420.1 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.03 OrthoFinder output from all 47 species
Nbi_g06340 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Pir_g15536 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g08937 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013974 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Sam_g18047 No alias component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Solyc05g005640.4.1 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.07 OrthoFinder output from all 47 species
Spa_g49760 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Tin_g01305 ATMBD9, MBD9 component *(MBD9) of SWR1 chromaTin remodeling complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 322 371
IPR019787 Znf_PHD-finger 94 140
IPR019787 Znf_PHD-finger 1406 1452
IPR028941 WHIM2_dom 1897 2032
IPR028942 WHIM1_dom 1488 1532
IPR001487 Bromodomain 1295 1349
No external refs found!