LOC_Os02g53690 (Os02g0776900)

Aliases : Os02g0776900

Description : 27.3.50 RNA.regulation of transcription.General Transcription Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. growth-regulating factor 5 (GRF5)

Gene families : OG_01_0000333 (Gene family) Phylogenetic Tree(s): OG0000333_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): LOC_Os02g53690
Cluster	HCCA cluster: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.06	Gene family
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.05	Gene family
AT2G45480	GRF9, AtGRF9	growth-regulating factor 9	0.08	Gene family
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.03	Gene family
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.06	Gene family
GSVIVT01015095001	No alias	27.3.50 RNA.regulation of transcription.General...	0.02	Gene family
GSVIVT01024326001	No alias	27.3.50 RNA.regulation of transcription.General...	0.09	Gene family
GSVIVT01027535001	No alias	27.3.50 RNA.regulation of transcription.General...	0.02	Gene family
LOC_Os06g02560	Os06g0116200	27.3.50 RNA.regulation of transcription.General...	0.03	Gene family
Solyc01g091540.2.1	Solyc01g091540.2	27.3.83 RNA.regulation of transcription.GRF zinc finger...	0.02	Gene family
Solyc03g082430.1.1	Solyc03g082430.1	35.2 not assigned.unknown Growth regulating factor...	0.05	Gene family
Solyc08g005430.3.1	Solyc08g005430.3	27.3.50 RNA.regulation of transcription.General...	0.06	Gene family
Solyc08g075950.2.1	Solyc08g075950.2	27.3.50 RNA.regulation of transcription.General...	0.04	Gene family
Solyc09g009200.2.1	Solyc09g009200.2	27.3.50 RNA.regulation of transcription.General...	0.02	Gene family
Solyc10g083510.2.1	Solyc10g083510.2	27.3.50 RNA.regulation of transcription.General...	0.03	Gene family
Solyc12g096070.2.1	Solyc12g096070.2	27.3.50 RNA.regulation of transcription.General...	0.02	Gene family
Zm00001d017602	GRMZM2G045977	27.3.50 RNA.regulation of transcription.General...	0.04	Gene family
Zm00001d018260	GRMZM5G893117	27.3.50 RNA.regulation of transcription.General...	0.02	Gene family
Zm00001d037117	GRMZM5G850129	27.3.50 RNA.regulation of transcription.General...	0.09	Gene family
Zm00001d045533	GRMZM2G119359	27.3.50 RNA.regulation of transcription.General...	0.03	Gene family
Zm00001d051456	GRMZM2G124566	27.3.50 RNA.regulation of transcription.General...	0.1	Gene family
Zm00001d052112	GRMZM2G105335	27.3.50 RNA.regulation of transcription.General...	0.07	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	91	133
IPR014978	Gln-Leu-Gln_QLQ	18	51

External Links

No external refs found!

LOC_Os02g53690 (Os02g0776900)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation