1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_21632

Gb_21632 (UPL1)


Aliases : UPL1

Description : monomeric E3 ubiquitin ligase (HECT)


Gene families : OG0001042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21632

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 UPL1,... Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
AMTR_s00061p00204480 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.06 OrthoFinder output from all 47 species
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.1 OrthoFinder output from all 47 species
Adi_g026954 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g077941 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g04900 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g16628 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g06583 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06863 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g16302 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27017 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g26360 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08879.t1 UPL1, Aspi01Gene08879 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene10347.t1 UPL1, Aspi01Gene10347 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0087.g042300 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=382-11403 0.07 OrthoFinder output from all 47 species
Azfi_s0116.g046399 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=235-11562 0.1 OrthoFinder output from all 47 species
Ceric.10G067500.1 UPL2, Ceric.10G067500 E3 ubiquitin ligase *(UPL1) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.29G011900.1 UPL1, Ceric.29G011900 E3 ubiquitin ligase *(UPL1) & original description:... 0.1 OrthoFinder output from all 47 species
Cre01.g012450 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Dcu_g02070 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12771 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g04957 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10043 UPL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009208001 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01014697001 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01014698001 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Len_g22981 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g23822 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05050 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40796 UPL2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_20049g0010 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.1 OrthoFinder output from all 47 species
MA_20049g0020 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
MA_7295g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_7295g0020 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp4g21620.1 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.09 OrthoFinder output from all 47 species
Ppi_g06511 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003603 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=387-11411 0.05 OrthoFinder output from all 47 species
Sam_g40563 No alias E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40576 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo154179 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Solyc04g076620.4.1 UPL1, Solyc04g076620 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
Solyc07g065630.4.1 UPL1, Solyc07g065630 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Spa_g17792 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g23911 UPL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29717 UPL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40173 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e009321_P001 UPL1, Zm00001e009321 monomeric E3 ubiquitin ligase (HECT) 0.05 OrthoFinder output from all 47 species
Zm00001e017836_P002 UPL1, Zm00001e017836 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species
Zm00001e039654_P001 UPL1, Zm00001e039654 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR010314 E3_Ub_ligase_DUF913 594 963
IPR015940 UBA 1473 1510
IPR000569 HECT_dom 3689 3999
IPR025527 HUWE1/Rev1_UBM 2904 2934
IPR025527 HUWE1/Rev1_UBM 2943 2974
IPR025527 HUWE1/Rev1_UBM 2867 2893
IPR010309 E3_Ub_ligase_DUF908 371 533
No external refs found!