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Gb_21477


Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 266.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21477

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000737.24 No alias No description available 0.01 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.02 OrthoFinder output from all 47 species
MA_69152g0010 MEE40 Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
MA_92274g0010 No alias Pentatricopeptide repeat-containing protein At1g63400... 0.06 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
Ore_g06557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 407 456
IPR002885 Pentatricopeptide_repeat 483 523
IPR002885 Pentatricopeptide_repeat 268 316
IPR002885 Pentatricopeptide_repeat 337 386
IPR002885 Pentatricopeptide_repeat 547 595
IPR002885 Pentatricopeptide_repeat 186 243
No external refs found!