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  5. Gb_21111

Gb_21111


Description : histone demethylase (PKDM8). transcription factor (JUMONJI)


Gene families : OG0002434 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21111
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Adi_g088261 No alias histone demethylase *(PKDM8) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20350 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23438.t1 Aspi01Gene23438 histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Cre02.g078700 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.01 OrthoFinder output from all 47 species
GSVIVT01024382001 No alias Protein modification.phosphorylation.TKL kinase... 0.02 OrthoFinder output from all 47 species
Gb_02799 No alias histone demethylase (PKDM8). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Len_g20483 No alias histone demethylase *(PKDM8) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05487 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41949 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012910 No alias histone demethylase *(PKDM8) & original description: CDS=45-3857 0.02 OrthoFinder output from all 47 species
Spa_g26750 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12715 No alias histone demethylase *(PKDM8) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e012998_P005 Zm00001e012998 histone demethylase (PKDM8). transcription factor (JUMONJI) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 288 411
IPR004198 Znf_C5HC2 511 561
IPR003349 JmjN 112 144
No external refs found!