Gb_21040

Description : protein factor (USP39) of U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP)

Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_21040
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
AT4G22285	No alias	Ubiquitin C-terminal hydrolases superfamily protein	0.03	OrthoFinder output from all 47 species
Als_g12364	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species
Dcu_g15885	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.03	OrthoFinder output from all 47 species
LOC_Os09g24250.1	LOC_Os09g24250	protein factor (USP39) of U4/U6 U5 small nuclear...	0.03	OrthoFinder output from all 47 species
Mp1g24510.1	No alias	protein factor (USP39) of U4/U6 U5 small nuclear...	0.04	OrthoFinder output from all 47 species
Ore_g16909	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	205	536
IPR001607	Znf_UBP	104	165

External Links

No external refs found!