Gb_20479


Description : Patellin-6 OS=Arabidopsis thaliana (sp|q9scu1|patl6_arath : 491.0)


Gene families : OG0000756 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000756_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20479

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00033540 evm_27.TU.AmTr_v1... Patellin-4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G22530 PATL2 PATELLIN 2 0.03 OrthoFinder output from all 47 species
AT4G09160 No alias SEC14 cytosolic factor family protein / phosphoglyceride... 0.04 OrthoFinder output from all 47 species
Adi_g039396 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.37G040600.1 Ceric.37G040600 not classified & original description: pacid=50615839... 0.01 OrthoFinder output from all 47 species
Dcu_g09471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g65380.1 LOC_Os01g65380 Patellin-5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os05g35460.1 LOC_Os05g35460 Patellin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g05578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26914 PATL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_1115516g0010 No alias Patellin-3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9244g0010 No alias Patellin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp4g16700.1 No alias Patellin-6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp4g16720.1 No alias Patellin-6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g24618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008144 No alias not classified & original description: CDS=1-1644 0.03 OrthoFinder output from all 47 species
Smo90159 No alias Patellin-6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc09g025230.4.1 Solyc09g025230 Patellin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e019109_P003 Zm00001e019109 Patellin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e031502_P004 Zm00001e031502 Patellin-6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e031729_P005 Zm00001e031729 Patellin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR011074 CRAL/TRIO_N_dom 168 209
IPR001251 CRAL-TRIO_dom 236 392
No external refs found!