Gb_20400 (GRF1, AtGRF1)

Aliases : GRF1, AtGRF1

Description : component GRF of GRF-GIF transcriptional complex

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_20400

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00189460	GRF4, AtGRF4,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
AMTR_s00065p00092420	GRF1, AtGRF1,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
AMTR_s00069p00196720	GRF1, AtGRF1,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.05	OrthoFinder output from all 47 species
AT2G22840	GRF1, AtGRF1	growth-regulating factor 1	0.05	OrthoFinder output from all 47 species
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.04	OrthoFinder output from all 47 species
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.02	OrthoFinder output from all 47 species
Als_g16124	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0097.g043820	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Azfi_s0197.g057383	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0256.g060519	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Cba_g11628	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Ceric.15G044200.1	GRF3, AtGRF3,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ceric.15G046200.1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g11812	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g26378	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01016762001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
GSVIVT01024326001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
GSVIVT01033800001	GRF3, AtGRF3	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
GSVIVT01038629001	AtGRF7, GRF7	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
LOC_Os02g53690.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
LOC_Os03g51970.1	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
LOC_Os04g51190.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Len_g36239	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
MA_111469g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
MA_18836g0010	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Mp8g16900.1	GRF2, AtGRF2	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011382	No alias	not classified & original description: CDS=103-1059	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011385	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225	No alias	not classified & original description: CDS=695-3535	0.04	OrthoFinder output from all 47 species
Smo420739	GRF2, AtGRF2	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
Solyc01g091540.3.1	GRF9, AtGRF9,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Solyc08g005430.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc08g079800.4.1	GRF2, AtGRF2,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc12g096070.2.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e004684_P002	Zm00001e004684	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e015436_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Zm00001e015561_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Zm00001e023229_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e029851_P005	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	320	362
IPR014978	Gln-Leu-Gln_QLQ	228	262

External Links

No external refs found!

Gb_20400 (GRF1, AtGRF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation