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  5. Gb_20313

Gb_20313 (AMY3, ATAMY3)


Aliases : AMY3, ATAMY3

Description : Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana (sp|q94a41|amy3_arath : 103.0)


Gene families : OG0003934 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003934_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20313

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00097050 CTF18,... Replication factor C subunit 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G04730 CTF18 P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001333.30 CTF18 No description available 0.01 OrthoFinder output from all 47 species
Cre16.g686950 CTF18 Replication factor C subunit 1 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Dcu_g36712 CTF18 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g15810.1 CTF18, LOC_Os03g15810 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10428330g0010 CTF18 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g06869 CTF18 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g091650.3.1 CTF18, Solyc09g091650 Replication factor C subunit 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!