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  5. Gb_20154

Gb_20154 (ATF1, TRXF1)


Aliases : ATF1, TRXF1

Description : no hits & (original description: none)


Gene families : OG0001099 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001099_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20154
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00119540 ATF1, TRXF1,... Redox homeostasis.chloroplast redox homeostasis.F-type... 0.06 OrthoFinder output from all 47 species
AT3G02730 ATF1, TRXF1 thioredoxin F-type 1 0.11 OrthoFinder output from all 47 species
Adi_g003203 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g102129 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03766 ATF1, TRXF1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g06364 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02991 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g00422 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07635 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g02927 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0388.g067618 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: CDS=462-1067 0.03 OrthoFinder output from all 47 species
Azfi_s2245.g109976 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: CDS=10-579 0.04 OrthoFinder output from all 47 species
Cba_g12466 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.37G049100.1 ATHM4, TRX-M4,... not classified & original description: pacid=50616292... 0.07 OrthoFinder output from all 47 species
Cre05.g243050 TRXF2, ATF2 Redox homeostasis.chloroplast redox homeostasis.F-type... 0.02 OrthoFinder output from all 47 species
Cre12.g496700 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g09180 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g12181 TRXF2, ATF2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26524 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g12943 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25843 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02038 ATF1, TRXF1 plastidial thioredoxin *(TrxL1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019070001 TRXF2, ATF2 Redox homeostasis.chloroplast redox homeostasis.F-type... 0.09 OrthoFinder output from all 47 species
LOC_Os01g68480.1 TRXF2, ATF2,... F-type thioredoxin 0.05 OrthoFinder output from all 47 species
Len_g18423 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.08 OrthoFinder output from all 47 species
MA_5229g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp2g20740.1 ATF1, TRXF1 F-type thioredoxin 0.03 OrthoFinder output from all 47 species
Mp3g08490.1 ATF1, TRXF1 F-type thioredoxin 0.04 OrthoFinder output from all 47 species
Msp_g29081 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g02641 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g09636 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g14018 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26787 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65672 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g12320 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g19425 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30576 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g32202 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33020 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015100 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: CDS=110-658 0.03 OrthoFinder output from all 47 species
Sam_g28295 No alias F-type thioredoxin *(Trx-F) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g056300.4.1 ATF1, TRXF1,... F-type thioredoxin 0.02 OrthoFinder output from all 47 species
Tin_g21213 TRXF2, ATF2 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e027512_P002 TRXF2, ATF2,... F-type thioredoxin 0.08 OrthoFinder output from all 47 species
Zm00001e040421_P002 TRXF2, ATF2,... F-type thioredoxin 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 91 187
No external refs found!