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  5. Gb_20153

Gb_20153


Description : Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana (sp|q9lic3|pp227_arath : 646.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20153
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
AMTR_s00039p00023570 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Adi_g066584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42356 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015639 No alias not classified & original description: CDS=1-1713 0.03 OrthoFinder output from all 47 species
Azfi_s0046.g030178 No alias ssDNA-binding protein *(OSB) & original description: CDS=82-2832 0.04 OrthoFinder output from all 47 species
Ceric.06G003600.1 Ceric.06G003600 not classified & original description: pacid=50620322... 0.04 OrthoFinder output from all 47 species
Ceric.07G069700.1 Ceric.07G069700 not classified & original description: pacid=50626450... 0.04 OrthoFinder output from all 47 species
Ceric.19G064200.1 MEF19, Ceric.19G064200 not classified & original description: pacid=50576611... 0.04 OrthoFinder output from all 47 species
Dcu_g06434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031292001 No alias Pentatricopeptide repeat-containing protein At1g56690,... 0.03 OrthoFinder output from all 47 species
Gb_01174 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_03473 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_04616 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_09793 No alias RNA editing factor (MEF7) 0.05 OrthoFinder output from all 47 species
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_14324 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_14392 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_14966 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 OrthoFinder output from all 47 species
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
Gb_23083 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_26154 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Gb_27057 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_27381 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_28759 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_30523 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
Gb_33051 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_33062 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_33828 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_37572 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.03 OrthoFinder output from all 47 species
Len_g09780 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18961 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08416 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_100606g0010 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_108139g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_109134g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_11138g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
MA_117650g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_16226g0010 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_210089g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_217g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_27726g0010 VAC1, ECB2, ATECB2 RNA editing factor (ECB2/VAC1) 0.04 OrthoFinder output from all 47 species
MA_30632g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_50118g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_63139g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_68933g0010 CRR22 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_71420g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_73205g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_83662g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_858608g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_97789g0010 CRR22 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
Nbi_g32352 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06944 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo111891 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.03 OrthoFinder output from all 47 species
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Spa_g16630 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26791 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29031 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 179 227
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 281 328
IPR032867 DYW_dom 555 678
IPR002885 Pentatricopeptide_repeat 523 551
IPR002885 Pentatricopeptide_repeat 255 279
IPR002885 Pentatricopeptide_repeat 457 480
No external refs found!