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  5. Gb_20052

Gb_20052


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 86.3)


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20052

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00016p00254630 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00151010 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00170960 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00171000 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00170840 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00033p00171210 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G65985 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT2G36430 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
Adi_g050777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08490.t1 Aspi01Gene08490 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29768.t1 Aspi01Gene29768 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57926.t1 Aspi01Gene57926 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46391 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g52253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027389001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033984001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01035820001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_23451 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_36110 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_37279 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_37285 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_37287 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g38120.1 LOC_Os01g38120 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os06g08120.1 LOC_Os06g08120 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os11g33394.1 LOC_Os11g33394 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g32880.1 LOC_Os12g32880 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g35601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g23330.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g38082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20007 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g009230.2.1 Solyc09g009230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g26898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036342_P001 Zm00001e036342 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 45 420
No external refs found!