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  5. Gb_19896

Gb_19896


Description : Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana (sp|q9sn39|pp320_arath : 484.0)


Gene families : OG0011717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19896
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Gb_10356 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_12502g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 500 525
IPR002885 Pentatricopeptide_repeat 233 257
IPR002885 Pentatricopeptide_repeat 600 624
IPR002885 Pentatricopeptide_repeat 205 230
IPR002885 Pentatricopeptide_repeat 261 289
IPR002885 Pentatricopeptide_repeat 391 421
IPR002885 Pentatricopeptide_repeat 292 340
IPR002885 Pentatricopeptide_repeat 425 472
IPR002885 Pentatricopeptide_repeat 132 179
IPR002885 Pentatricopeptide_repeat 526 574
No external refs found!