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  5. Gb_19734

Gb_19734 (OPCL1)


Aliases : OPCL1

Description : 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana (sp|q84p21|4cll5_arath : 494.0)


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19734

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00191640 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Aop_g37015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63196.t1 OPCL1, Aspi01Gene63196 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63198.t1 OPCL1, Aspi01Gene63198 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0464.g072360 No alias not classified & original description: CDS=14-1684 0.03 OrthoFinder output from all 47 species
GSVIVT01008694001 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01031500001 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g04000.1 OPCL1, LOC_Os03g04000 OPC-8:CoA synthetase 0.01 OrthoFinder output from all 47 species
Lfl_g08577 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_161102g0020 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_951010g0010 OPCL1 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g59700 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56806 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc08g076300.3.1 Solyc08g076300 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.01 OrthoFinder output from all 47 species
Tin_g07437 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 42 443
IPR025110 AMP-bd_C 452 527
No external refs found!