Gb_19407

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 177.0)

Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_19407

Target	Alias	Description	ECC score	Gene Family Method
Aev_g33464	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_01729	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_04010	ORF170	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_10177	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	OrthoFinder output from all 47 species
Gb_25092	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Gb_33444	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	OrthoFinder output from all 47 species
Gb_36581	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_37614	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_37775	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	OrthoFinder output from all 47 species
Gb_39221	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_39395	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	8	60

External Links

No external refs found!