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  5. Gb_19166

Gb_19166 (PSBC)


Aliases : PSBC

Description : Photosystem II CP43 reaction center protein OS=Cryptomeria japonica (sp|b1vkg9|psbc_cryja : 243.0)


Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 PSBC,... Photosystem II CP43 reaction center protein OS=Carica papaya 0.05 OrthoFinder output from all 47 species
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.05 OrthoFinder output from all 47 species
ATCG00280 PSBC photosystem II reaction center protein C 0.05 OrthoFinder output from all 47 species
Aev_g04878 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ala_g09125 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Als_g01018 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Aob_g06735 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Cba_g32229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.13 OrthoFinder output from all 47 species
Ceric.02G013100.1 PSBC, Ceric.02G013100 component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ceric.07G101200.1 PSBC, Ceric.07G101200 not classified & original description: pacid=50626880... 0.06 OrthoFinder output from all 47 species
Ceric.12G058500.1 PSBC, Ceric.12G058500 not classified & original description: pacid=50601680... 0.03 OrthoFinder output from all 47 species
Ceric.12G087100.1 PSBC, Ceric.12G087100 not classified & original description: pacid=50602384... 0.03 OrthoFinder output from all 47 species
Ceric.1Z161200.1 PSBC, Ceric.1Z161200 component *(PsbC/CP43) of PS-II reaction center complex... 0.14 OrthoFinder output from all 47 species
Ceric.24G024100.1 PSBC, Ceric.24G024100 component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.33G053900.1 PSBC, Ceric.33G053900 not classified & original description: pacid=50607717... 0.12 OrthoFinder output from all 47 species
Ceric.36G045000.1 PSBC, Ceric.36G045000 not classified & original description: pacid=50568984... 0.06 OrthoFinder output from all 47 species
Ceric.38G009700.1 PSBC, Ceric.38G009700 component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ceric.38G040900.1 PSBC, Ceric.38G040900 not classified & original description: pacid=50580441... 0.02 OrthoFinder output from all 47 species
Dac_g04293 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.22 OrthoFinder output from all 47 species
Dcu_g10666 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.14 OrthoFinder output from all 47 species
Dde_g30384 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
GSVIVT01006662001 PSBC Photosystem II CP43 reaction center protein OS=Platanus... 0.04 OrthoFinder output from all 47 species
LOC_Os02g24632.1 PSBC, LOC_Os02g24632 component PsbC/CP43 of PS-II reaction center complex 0.11 OrthoFinder output from all 47 species
LOC_Os04g16874.1 PSBC, LOC_Os04g16874 component PsbC/CP43 of PS-II reaction center complex 0.1 OrthoFinder output from all 47 species
LOC_Os10g21212.1 PSBC, LOC_Os10g21212 component PsbC/CP43 of PS-II reaction center complex 0.12 OrthoFinder output from all 47 species
Len_g16437 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Lfl_g10242 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.14 OrthoFinder output from all 47 species
MA_9155188g0010 PSBC Photosystem II CP43 reaction center protein OS=Cuscuta... 0.07 OrthoFinder output from all 47 species
Msp_g00655 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ore_g02105 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Pnu_g00846 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Ppi_g02376 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255 PSBC not classified & original description: CDS=1-627 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817 PSBC not classified & original description: CDS=1-717 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637 PSBC not classified & original description: CDS=1-525 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638 PSBC not classified & original description: CDS=1-420 0.05 OrthoFinder output from all 47 species
Sam_g14692 No alias component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Smo137689 PSBC Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.15 OrthoFinder output from all 47 species
Solyc00g230070.1.1 PSBC, Solyc00g230070 Photosystem II CP43 reaction center protein OS=Lepidium... 0.04 OrthoFinder output from all 47 species
Solyc00g500054.1.1 PSBC, Solyc00g500054 component PsbD/D2 of PS-II reaction center complex.... 0.05 OrthoFinder output from all 47 species
Solyc00g500136.1.1 PSBC, Solyc00g500136 component PsbD/D2 of PS-II reaction center complex.... 0.05 OrthoFinder output from all 47 species
Solyc00g500206.1.1 PSBC, Solyc00g500206 component PsbD/D2 of PS-II reaction center complex.... 0.05 OrthoFinder output from all 47 species
Solyc07g009000.1.1 PSBC, Solyc07g009000 Photosystem II CP43 reaction center protein OS=Coffea... 0.1 OrthoFinder output from all 47 species
Solyc09g016930.1.1 PSBC, Solyc09g016930 Photosystem II CP43 reaction center protein OS=Coffea... 0.06 OrthoFinder output from all 47 species
Solyc12g027550.2.1 PSBC, Solyc12g027550 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.11 OrthoFinder output from all 47 species
Zm00001e042042_P001 PSBC, Zm00001e042042 Photosystem II CP43 reaction center protein OS=Sorghum... 0.11 OrthoFinder output from all 47 species
Zm00001e042157_P001 PSBC, Zm00001e042157 Photosystem II CP43 reaction center protein OS=Sorghum... 0.04 OrthoFinder output from all 47 species
Zm00001e042269_P001 PSBC, Zm00001e042269 Photosystem II CP43 reaction center protein OS=Sorghum... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 1 59
IPR000932 PS_antenna-like 177 283
IPR000932 PS_antenna-like 91 175
No external refs found!