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  5. Gb_18893

Gb_18893 (CHA19, CHR19, ETL1)


Aliases : CHA19, CHR19, ETL1

Description : chromatin remodeling factor (Etl1)


Gene families : OG0005169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005169_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18893
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00033620 CHA19, CHR19,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Adi_g022682 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G067600.1 CHA19, CHR19,... ATPase component *(Etl1) & original description:... 0.06 OrthoFinder output from all 47 species
Lfl_g02212 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20795 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26219 No alias ATPase component *(Etl1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g014770.3.1 CHA19, CHR19,... chromatin remodeling factor (Etl1) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 602 714
IPR000330 SNF2_N 240 532
No external refs found!