Gb_18035 (EDF4, RAV1)

Aliases : EDF4, RAV1

Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)

Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_18035
Cluster	HCCA: Cluster_38

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00238950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AT1G13260	EDF4, RAV1	related to ABI3/VP1 1	0.04	OrthoFinder output from all 47 species
AT1G68840	EDF2, AtRAV2,...	related to ABI3/VP1 2	0.04	OrthoFinder output from all 47 species
AT2G36080	No alias	AP2/B3-like transcriptional factor family protein	0.03	OrthoFinder output from all 47 species
AT3G11580	No alias	AP2/B3-like transcriptional factor family protein	0.03	OrthoFinder output from all 47 species
Adi_g058439	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.05	OrthoFinder output from all 47 species
Adi_g058440	EDF3	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Adi_g114045	NGA1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g44854	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.05	OrthoFinder output from all 47 species
Ceric.11G039200.1	EDF4, RAV1,...	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Ceric.20G072500.1	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.06	OrthoFinder output from all 47 species
Ceric.20G072600.1	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g16987	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01019699001	NGA1	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01023582001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
LOC_Os01g04750.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
LOC_Os01g04800.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
LOC_Os01g49830.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
LOC_Os06g01860.1	LOC_Os06g01860	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
LOC_Os08g06120.1	NGA1, LOC_Os08g06120	transcription factor (RAV/NGATHA)	0.06	OrthoFinder output from all 47 species
LOC_Os10g39190.1	NGA1, LOC_Os10g39190	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
LOC_Os12g06080.1	LOC_Os12g06080	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
MA_116574g0010	EDF3	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.06	OrthoFinder output from all 47 species
MA_18923g0010	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
MA_20372g0020	EDF4, RAV1	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
MA_70029g0010	NGA1	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
MA_865117g0010	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Nbi_g11598	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g22199	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Sam_g30092	No alias	AP2-RAV-type transcription factor *(EDF) & original...	0.06	OrthoFinder output from all 47 species
Solyc04g007000.2.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Solyc05g004000.1.1	NGA1, Solyc05g004000	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Solyc05g009790.1.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Solyc08g013690.1.1	NGA3, Solyc08g013690	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Solyc09g010230.2.1	Solyc09g010230	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Spa_g28812	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e000156_P001	NGA3, Zm00001e000156	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e007152_P001	NGA1, Zm00001e007152	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e016956_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
Zm00001e020092_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Zm00001e024165_P001	Zm00001e024165	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e032325_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Zm00001e040214_P001	NGA3, Zm00001e040214	transcription factor (RAV/NGATHA)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	343	390
IPR003340	B3_DNA-bd	480	582

External Links

No external refs found!

Gb_18035 (EDF4, RAV1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation