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  5. Gb_17428

Gb_17428


Description : Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana (sp|q9xe98|pp303_arath : 383.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17428

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00195340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g18205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16974 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g23823 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30861 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g31006 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27542 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g29475 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g33192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34729.t1 Aspi01Gene34729 ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g05522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.04 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
LOC_Os09g39970.1 LOC_Os09g39970 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.05 OrthoFinder output from all 47 species
Len_g26507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g28439 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g57437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07543 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g04505 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g05803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18475 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g33706 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo34785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Spa_g09809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14009 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g15000 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g15015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26143 MEF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 324
IPR002885 Pentatricopeptide_repeat 479 516
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 175 223
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 251 276
IPR002885 Pentatricopeptide_repeat 352 376
No external refs found!