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  5. Gb_16490

Gb_16490 (ORF170)


Aliases : ORF170

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 628.0)


Gene families : OG0000039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16490

Target Alias Description ECC score Gene Family Method Actions
Adi_g007388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033970 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g048291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g124558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g28237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14684.t1 Aspi01Gene14684 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26330.t1 Aspi01Gene26330 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34789.t1 Aspi01Gene34789 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38650.t1 Aspi01Gene38650 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40557.t1 Aspi01Gene40557 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40851.t1 Aspi01Gene40851 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42554.t1 Aspi01Gene42554 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55146.t1 Aspi01Gene55146 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57651.t1 Aspi01Gene57651 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g25076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_01598 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_08225 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_18389 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 OrthoFinder output from all 47 species
Gb_20270 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder output from all 47 species
Gb_23494 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 OrthoFinder output from all 47 species
Gb_27398 ORF170 Retrovirus-related Pol polyprotein from transposon TNT... 0.1 OrthoFinder output from all 47 species
Gb_29886 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g28515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11983 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g24025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g14118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27031 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23852 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g31525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 422 534
IPR013103 RVT_2 765 864
IPR025724 GAG-pre-integrase_dom 355 405
No external refs found!