LOC_Os02g46450 (Os02g0689800)


Aliases : Os02g0689800

Description : 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1)


Gene families : OG_01_0006104 (Gene family) Phylogenetic Tree(s): OG0006104_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os02g46450
Cluster HCCA cluster: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AT3G12810 SRCAP, PIE1, chr13 SNF2 domain-containing protein / helicase... 0.09 Gene family
Cpa|evm.model.tig00000194.25 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.01 Gene family
Cpa|evm.model.tig00000194.26 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
Cre14.g618860 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.03 Gene family
GSVIVT01033511001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.12 Gene family
MA_424432g0010 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
Solyc03g063220.2.1 Solyc03g063220.2 27.3.44 RNA.regulation of transcription.Chromatin... 0.08 Gene family
Zm00001d017660 GRMZM2G428242 27.3.44 RNA.regulation of transcription.Chromatin... 0.13 Gene family
Zm00001d051507 GRMZM2G081429,... 27.3.44 RNA.regulation of transcription.Chromatin... 0.16 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 99 207
No external refs found!