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  5. Gb_15744

Gb_15744


Description : Probable F-box protein At4g22030 OS=Arabidopsis thaliana (sp|o65451|fb333_arath : 174.0)


Gene families : OG0001367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001367_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_15744

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00037390 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00044p00128270 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00044p00128640 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00055p00185500 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00091510 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.04 OrthoFinder output from all 47 species
AT4G22030 No alias F-box family protein with a domain of unknown function (DUF295) 0.12 OrthoFinder output from all 47 species
Als_g20113 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene33945.t1 Aspi01Gene33945 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34497.t1 Aspi01Gene34497 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34559.t1 Aspi01Gene34559 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34562.t1 Aspi01Gene34562 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34564.t1 Aspi01Gene34564 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g13220.1 LOC_Os02g13220 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os05g04570.1 LOC_Os05g04570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g01970.1 LOC_Os12g01970 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g35722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38437 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g24381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g080830.1.1 Solyc02g080830 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc02g080840.1.1 Solyc02g080840 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc02g080850.1.1 Solyc02g080850 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e014444_P001 Zm00001e014444 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e024925_P001 Zm00001e024925 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 138 452
No external refs found!