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  5. Gb_15589

Gb_15589 (ATCSP2, GRP2, CSDP2, CSP2)


Aliases : ATCSP2, GRP2, CSDP2, CSP2

Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_15589
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00206510 GRP2B, ATGRP2B,... External stimuli response.temperature.Csd... 0.03 OrthoFinder output from all 47 species
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.04 OrthoFinder output from all 47 species
Adi_g105127 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Als_g03295 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Aop_g12642 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g23689 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g32314 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019874 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g06106 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Sam_g26933 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Sam_g45087 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Solyc01g111300.4.1 GRP2B, ATGRP2B,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Spa_g43386 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 198 213
IPR002059 CSP_DNA-bd 81 145
No external refs found!