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  5. Gb_15179

Gb_15179 (EMB2780)


Aliases : EMB2780

Description : DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica (sp|q9lre6|dpod1_orysj : 207.0)


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_15179
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT5G63960 EMB2780 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000975 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001545.7 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.01 OrthoFinder output from all 47 species
Cre01.g015250 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Dac_g01043 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
LOC_Os11g08330.1 EMB2780, LOC_Os11g08330 component POLD1 of DNA polymerase delta complex 0.04 OrthoFinder output from all 47 species
Mp4g05690.1 EMB2780 component POLD1 of DNA polymerase delta complex 0.04 OrthoFinder output from all 47 species
Solyc10g081250.3.1 EMB2780, Solyc10g081250 component POLD1 of DNA polymerase delta complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 181 300
No external refs found!