AMTR_s00001p00157430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.144

Description : RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase


Gene families : OG_01_0004055 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004055_tree ,
OG_02_0004423 (LandPlants) Phylogenetic Tree(s): OG_02_0004423_tree ,
OG_03_0004106 (SeedPlants) Phylogenetic Tree(s): OG_03_0004106_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00157430
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT1G76050 No alias Pseudouridine synthase family protein 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 83 130
IPR006145 PsdUridine_synth_RsuA/RluA 157 347
No external refs found!