Gb_13912


Description : RNA editing factor (OZ-type)


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13912

Target Alias Description ECC score Gene Family Method Actions
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.09 OrthoFinder output from all 47 species
Aev_g05524 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11397 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19944 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15963 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0661.g081440 No alias RNA editing factor *(OZ) & original description: CDS=90-3326 0.04 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G001300.1 Ceric.03G001300 RNA editing factor *(OZ) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g02287 No alias RNA editing factor *(OZ) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01014166001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_05351 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
Lfl_g06216 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39763 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
MA_10436123g0020 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_7499122g0010 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Msp_g09059 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03681 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04568 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 370 398
IPR001876 Znf_RanBP2 405 431
No external refs found!