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  5. Gb_13708

Gb_13708 (AGO7, ZIP)


Aliases : AGO7, ZIP

Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13708

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265690 PNH, AGO10, ZLL,... Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
AT1G31290 AGO3 ARGONAUTE 3 0.05 OrthoFinder output from all 47 species
Aspi01Gene19810.t1 AGO7, ZIP,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01320 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.04 OrthoFinder output from all 47 species
MA_10122566g0010 PNH, AGO10, ZLL Protein argonaute 10 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10429131g0010 AGO1 Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
MA_18547g0010 AGO1 Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Pnu_g18269 AGO6 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g069280.2.1 AGO2, Solyc02g069280 siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 OrthoFinder output from all 47 species
Zm00001e016179_P001 PNH, AGO10, ZLL,... Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 395 503
IPR003165 Piwi 679 985
IPR032474 Argonaute_N 170 317
IPR014811 ArgoL1 328 376
No external refs found!