Gb_13320

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 179.0)

Gene families : OG0000009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_13320

Target	Alias	Description	ECC score	Gene Family Method
Aev_g33464	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_00288	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_01729	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_02052	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_04010	ORF170	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_08095	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Gb_13701	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	OrthoFinder output from all 47 species
Gb_15908	ORF120	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_25092	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Gb_27534	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Gb_27666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_28242	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	OrthoFinder output from all 47 species
Gb_33444	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	OrthoFinder output from all 47 species
Gb_33583	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Gb_35549	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	OrthoFinder output from all 47 species
Gb_36581	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	137	186
IPR001584	Integrase_cat-core	200	315

External Links

No external refs found!

Gb_13320

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation