LOC_Os02g43150 (Os02g0645600)


Aliases : Os02g0645600

Description : 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate. GATA transcription factor 5 (GATA5)


Gene families : OG_01_0000059 (Gene family) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os02g43150
Cluster HCCA cluster: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT2G18380 GATA20 GATA transcription factor 20 0.03 Gene family
AT4G26150 GATA22, CGA1, GNL cytokinin-responsive gata factor 1 0.07 Gene family
AT5G56860 GNC, GATA21 GATA type zinc finger transcription factor family protein 0.04 Gene family
GSVIVT01018951001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
Smo69510 PACid_15417968 No description available 0.01 Gene family
Solyc01g090760.3.1 Solyc01g090760.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.17 Gene family
Solyc02g084590.3.1 Solyc02g084590.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
Solyc05g053500.3.1 Solyc05g053500.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.05 Gene family
Solyc08g066510.3.1 Solyc08g066510.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
Solyc09g075610.3.1 Solyc09g075610.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
Solyc10g018560.2.1 Solyc10g018560.2 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
Zm00001d017409 GRMZM2G140669 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.01 Gene family
Zm00001d029896 GRMZM2G113098 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
Zm00001d039113 GRMZM2G325850 No description available 0.01 Gene family
Zm00001d043969 GRMZM2G123909 No description available 0.02 Gene family
Zm00001d047081 GRMZM2G101058 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
Zm00001d051981 GRMZM2G379005 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0043565 sequence-specific DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000679 Znf_GATA 350 384
No external refs found!