Gb_13006 (PUB38, ATPUB38)

Aliases : PUB38, ATPUB38

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_13006

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00240140	evm_27.TU.AmTr_v1...	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AT3G47820	PUB39	PLANT U-BOX 39	0.02	OrthoFinder output from all 47 species
Ala_g10271	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62638.t1	PUB38, ATPUB38,...	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.02G042800.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Dcu_g40033	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03795	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
LOC_Os06g13080.1	PUB39, LOC_Os06g13080	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os06g13090.1	PUB39, LOC_Os06g13090	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Lfl_g02186	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
MA_252170g0010	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Mp1g18000.1	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Msp_g15300	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g19795	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001736	PUB39	U-Box-group-II E3 ubiquitin ligase & original...	0.02	OrthoFinder output from all 47 species
Zm00001e036060_P001	PUB39, Zm00001e036060	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	383	422
IPR003613	Ubox_domain	22	89

External Links

No external refs found!

Gb_13006 (PUB38, ATPUB38)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation