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  5. Gb_12910

Gb_12910


Description : Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana (sp|q9m9x9|ppr18_arath : 348.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12910

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00153760 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.02 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g01835 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g39755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12358 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_28709 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
MA_10433108g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.03 OrthoFinder output from all 47 species
MA_953698g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Pnu_g09546 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Smo91306 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 OrthoFinder output from all 47 species
Solyc01g097130.4.1 Solyc01g097130 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Solyc03g112560.4.1 Solyc03g112560 Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 348
IPR002885 Pentatricopeptide_repeat 623 670
IPR002885 Pentatricopeptide_repeat 165 209
IPR002885 Pentatricopeptide_repeat 724 773
IPR002885 Pentatricopeptide_repeat 483 531
IPR002885 Pentatricopeptide_repeat 452 480
IPR002885 Pentatricopeptide_repeat 698 722
IPR002885 Pentatricopeptide_repeat 802 827
IPR002885 Pentatricopeptide_repeat 833 862
IPR002885 Pentatricopeptide_repeat 592 616
IPR002885 Pentatricopeptide_repeat 129 158
No external refs found!