Gb_12891 (SVR1)

Aliases : SVR1

Description : rRNA pseudouridine synthase (RsuA)

Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_12891

Target	Alias	Description	ECC score	Gene Family Method
AT2G39140	SVR1	pseudouridine synthase family protein	0.03	OrthoFinder output from all 47 species
Azfi_s1775.g106727	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
LOC_Os03g05806.1	SVR1, LOC_Os03g05806	rRNA pseudouridine synthase (RsuA)	0.04	OrthoFinder output from all 47 species
Len_g30464	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Ore_g34913	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Pnu_g06316	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.04	OrthoFinder output from all 47 species
Ppi_g18476	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Sam_g12462	No alias	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Smo45172	SVR1	RNA processing.RNA...	0.04	OrthoFinder output from all 47 species
Solyc11g008360.3.1	SVR1, Solyc11g008360	rRNA pseudouridine synthase (RsuA)	0.03	OrthoFinder output from all 47 species
Zm00001e000423_P001	SVR1, Zm00001e000423	rRNA pseudouridine synthase (RsuA)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	149	292
IPR002942	S4_RNA-bd	86	128

External Links

No external refs found!