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  5. Gb_12722

Gb_12722


Description : RNA editing factor (MEF9)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12722
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT2G20540 MEF21 mitochondrial editing factor 21 0.03 OrthoFinder output from all 47 species
Gb_03570 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_13100 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_23085 No alias RNA editing factor (MEF19) 0.07 OrthoFinder output from all 47 species
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 OrthoFinder output from all 47 species
Gb_38068 OTP86 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_38158 CRR2 OTP70 plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_10357393g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g33170... 0.07 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_16339g0010 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 308 336
IPR002885 Pentatricopeptide_repeat 399 429
IPR002885 Pentatricopeptide_repeat 533 580
IPR002885 Pentatricopeptide_repeat 432 478
IPR002885 Pentatricopeptide_repeat 372 398
IPR002885 Pentatricopeptide_repeat 155 185
IPR002885 Pentatricopeptide_repeat 673 702
IPR002885 Pentatricopeptide_repeat 93 122
IPR002885 Pentatricopeptide_repeat 186 214
IPR002885 Pentatricopeptide_repeat 248 278
IPR002885 Pentatricopeptide_repeat 125 154
IPR002885 Pentatricopeptide_repeat 341 368
IPR002885 Pentatricopeptide_repeat 217 247
IPR002885 Pentatricopeptide_repeat 608 631
IPR032867 DYW_dom 706 830
No external refs found!