1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_12262

Gb_12262


Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 247.0)


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.04 OrthoFinder output from all 47 species
AMTR_s00032p00197250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55890,... 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00041370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.03 OrthoFinder output from all 47 species
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 OrthoFinder output from all 47 species
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.04 OrthoFinder output from all 47 species
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.04 OrthoFinder output from all 47 species
LOC_Os01g63400.1 LOC_Os01g63400 Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.06 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.05 OrthoFinder output from all 47 species
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.06 OrthoFinder output from all 47 species
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.03 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.06 OrthoFinder output from all 47 species
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.05 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Ore_g27863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g077650.2.1 Solyc02g077650 Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.03 OrthoFinder output from all 47 species
Zm00001e027557_P001 Zm00001e027557 Pentatricopeptide repeat-containing protein At3g48810... 0.05 OrthoFinder output from all 47 species
Zm00001e034625_P001 Zm00001e034625 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 102 131
IPR002885 Pentatricopeptide_repeat 200 249
IPR002885 Pentatricopeptide_repeat 134 182
IPR002885 Pentatricopeptide_repeat 270 319
IPR002885 Pentatricopeptide_repeat 410 458
IPR002885 Pentatricopeptide_repeat 340 389
No external refs found!