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  5. Gb_12162

Gb_12162


Description : CASP-like protein 1U1 OS=Picea sitchensis (sp|a9p0a6|cspl5_picsi : 149.0)


Gene families : OG0001933 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12162

Target Alias Description ECC score Gene Family Method Actions
AT4G15620 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
GSVIVT01020544001 No alias CASP-like protein 1C2 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
GSVIVT01037957001 No alias CASP-like protein 1B2 OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
LOC_Os12g41690.1 LOC_Os12g41690 CASP-like protein 1B1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_1041g0010 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.03 OrthoFinder output from all 47 species
Solyc01g067300.3.1 Solyc01g067300 CASP-like protein 1D1 OS=Populus trichocarpa... 0.04 OrthoFinder output from all 47 species
Solyc01g067330.3.1 Solyc01g067330 CASP-like protein 1E1 OS=Glycine max... 0.03 OrthoFinder output from all 47 species
Solyc06g072550.3.1 Solyc06g072550 CASP-like protein 1F1 OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Zm00001e024279_P001 Zm00001e024279 Casparian strip membrane protein 2 OS=Sorghum bicolor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR006702 CASP_dom 26 171
No external refs found!