1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_12159

Gb_12159


Description : CASP-like protein 1U1 OS=Picea sitchensis (sp|a9p0a6|cspl5_picsi : 122.0)


Gene families : OG0001933 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001933_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12159
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265970 evm_27.TU.AmTr_v1... Casparian strip membrane protein 3 OS=Sorghum bicolor 0.02 OrthoFinder output from all 47 species
AMTR_s00016p00176090 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.05 OrthoFinder output from all 47 species
AMTR_s00016p00177940 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00178190 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
AMTR_s00040p00135930 evm_27.TU.AmTr_v1... Casparian strip membrane protein 2 OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
AMTR_s00092p00142720 evm_27.TU.AmTr_v1... CASP-like protein 1B2 OS=Populus trichocarpa 0.03 OrthoFinder output from all 47 species
AT1G14160 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT2G36100 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT3G11550 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT4G15610 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
AT4G15620 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT4G20390 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT4G25040 No alias Uncharacterised protein family (UPF0497) 0.01 OrthoFinder output from all 47 species
AT5G06200 No alias Uncharacterised protein family (UPF0497) 0.03 OrthoFinder output from all 47 species
AT5G44550 No alias Uncharacterised protein family (UPF0497) 0.05 OrthoFinder output from all 47 species
GSVIVT01017795001 No alias CASP-like protein 1E2 OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Gb_26811 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_40899 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.05 OrthoFinder output from all 47 species
LOC_Os01g13560.1 LOC_Os01g13560 CASP-like protein 1C1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g36845.1 LOC_Os02g36845 Casparian strip membrane protein 7 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58760.1 LOC_Os04g58760 Casparian strip membrane protein 1 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_67384g0020 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.02 OrthoFinder output from all 47 species
Solyc01g067330.3.1 Solyc01g067330 CASP-like protein 1E1 OS=Glycine max... 0.04 OrthoFinder output from all 47 species
Solyc02g069730.3.1 Solyc02g069730 CASP-like protein 1B1 OS=Ricinus communis... 0.03 OrthoFinder output from all 47 species
Solyc02g088160.4.1 Solyc02g088160 Casparian strip membrane protein 3 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc03g097720.4.1 Solyc03g097720 CASP-like protein 1F1 OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Solyc04g005620.3.1 Solyc04g005620 Casparian strip membrane protein 2 OS=Solanum demissum... 0.03 OrthoFinder output from all 47 species
Solyc06g072550.3.1 Solyc06g072550 CASP-like protein 1F1 OS=Vitis vinifera... 0.01 OrthoFinder output from all 47 species
Solyc06g074230.3.1 Solyc06g074230 Casparian strip membrane protein 2 OS=Triphysaria... 0.03 OrthoFinder output from all 47 species
Solyc09g010200.4.1 Solyc09g010200 Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Solyc10g083250.2.1 Solyc10g083250 Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Zm00001e009346_P001 Zm00001e009346 CASP-like protein 1D1 OS=Zea mays (sp|b6u361|cspl3_maize : 309.0) 0.01 OrthoFinder output from all 47 species
Zm00001e026902_P001 Zm00001e026902 CASP-like protein 1C2 OS=Zea mays (sp|b6szu6|cspl5_maize : 227.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
BP GO:0006359 regulation of transcription by RNA polymerase III IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR006702 CASP_dom 56 214
No external refs found!