Gb_11760 (SNL3, ATSIN3, SIN3)

Aliases : SNL3, ATSIN3, SIN3

Description : component SNL of histone deacetylase machineries

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_11760

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021234.23	SNL5	Paired amphipathic helix protein Sin3-like 3...	0.01	OrthoFinder output from all 47 species
Cre03.g180800	SNL4	Paired amphipathic helix protein Sin3-like 4...	0.05	OrthoFinder output from all 47 species
Pir_g44415	SNL2	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Spa_g02528	SNL4	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g44186	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g56389	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e029726_P003	SNL4, Zm00001e029726	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	363	406
IPR003822	PAH	145	188
IPR003822	PAH	58	102
IPR031693	Sin3_C	1169	1440
IPR013194	HDAC_interact_dom	502	593

External Links

No external refs found!